Tools

Downloadable Tools

  • RMAPBS: a short-read mapping tool specialized for mapping reads in bisulfite sequencing experiments included in the RMAP package. As with the original RMAP tool, RAMPBS can map reads with or without error probability information (quality scores). The RMAPBS algorithm was developed in a collaboration between the groups of Andrew Smith at USC and Michael Zhang at CSHL. For additional details see Smith et al. (2009).
  • AutoGenome, being developed by Wei Wang's group, is a pipeline to assist processing, visualization and analysis of sequencing data. It also provides access to the softwares such as ChromaSig and Chromia.

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